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[COPY] Find all spc point spectra in general method
Find spc point spectra in general method

Reuse these data in your code

Query, endpoint and code for reusing the same data
https://opendata1.opendata.u-psud.fr/sparql/
prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 
Howto write a query SPARQL? (in French)
{{#sparql:prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 

| endpoint = https://opendata1.opendata.u-psud.fr/sparql/
| chart=bordercloud.visualization.DataTable
| options=
| log=2
}}
Howto install LinkedWiki in my wiki? Howto insert this graph in my wiki?
Test this script in a new tab.
<html>
    <head>
        <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js"  async></script>
    </head>
    <body onload="testQuery();">
        <script>
function testQuery(){
    var endpoint = "https://opendata1.opendata.u-psud.fr/sparql/";
    var query = "prefix daapp: <http://daap.eu/wiki/Data:Project#> \n\
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> \n\
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n\
select distinct ?spc\n\
where {\n\
\n\
\n\
  		{\n\
          select ?spc\n\
                 where {\n\
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .\n\
         ?campaign project:hasSlide ?slide .\n\
    	?slide project:hasCell ?cell .\n\
             ?cell project:hasPosition ?position.\n\
             ?position 	project:hasMeasure ?spc .\n\
          }\n\
   }UNION{\n\
           select ?spc\n\
                 where {\n\
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .\n\
         ?campaign project:hasSlide ?slide .\n\
             ?position 	project:hasMeasure ?spc .\n\
          }\n\
    }\n\
          \n\
} \n\"

   // $('#bodyContentResearch').append(queryDataset);
    $.ajax({
                url: endpoint,
                dataType: 'json',
                data: {
                    queryLn: 'SPARQL',
                    query: query ,
                    limit: 'none',
                    infer: 'true',
                    Accept: 'application/sparql-results+json'
                },
                success: displayResult,
                error: displayError
        });
}

function displayError(xhr, textStatus, errorThrown) {
    console.log(textStatus);
    console.log(errorThrown);
}

function displayResult(data) {
    $.each(data.results.bindings, function(index, bs) {
        console.log(bs);
        $("body").append(JSON.stringify(bs) + "<hr/>");
    });
}

        </script>
    </body>
</html>
Test this script in a new tab (Careful, several charts need a API key).
Howto insert this graph in my html page?
<html>
    <head>
     <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">

     <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.9.0/css/all.min.css">

     <script
            src="https://code.jquery.com/jquery-3.4.1.min.js"
            integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo="
            crossorigin="anonymous"> </script>
     <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1" crossorigin="anonymous"> </script>
     <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"> </script>

     <script type="text/javascript" src="https://bordercloud.github.io/sgvizler2/sgvizler2/sgvizler2.js" defer> </script>
     <script type="text/javascript" src="https://io.datascience-paris-saclay.fr/js/initExampleHTML.js"  defer > </script>
    </head>
<body style="margin:0;">
<div id="sgvzl_example_query"
   data-sgvizler-endpoint="https://opendata1.opendata.u-psud.fr/sparql/"
   data-sgvizler-query="prefix daapp: &lt;http://daap.eu/wiki/Data:Project#&gt; 
prefix project:&lt;http://daap.eu/wiki/Data:Analyse_des_macrophages#&gt; 
prefix rdfs: &lt;http://www.w3.org/2000/01/rdf-schema#&gt;
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       &lt;http://daap.eu/wiki/Analyse_des_macrophages_m&eacute;thode_1&gt;  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       &lt;http://daap.eu/wiki/Analyse_des_macrophages_m&eacute;thode_1&gt;  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 
"
    data-sgvizler-chart='bordercloud.visualization.DataTable'
    data-sgvizler-chart-options=''
    data-sgvizler-endpoint_output_format='json'
    data-sgvizler-log='2'
    style='width:100%; height:auto;'  />

<script>
/*$(function() {
   sgvizler2.containerDrawAll({
       // Google Api key
       googleApiKey : "GOOGLE_MAP_API_KEY",
       // OpenStreetMap Access Token
       //  https://www.mapbox.com/api-documentation/#access-tokens
       osmAccessToken : "OSM_MAP_API_KEY"
     });
});*/
</script>

</body>
</html>
from SPARQLWrapper import SPARQLWrapper, JSON

sparql = SPARQLWrapper("https://opendata1.opendata.u-psud.fr/sparql/")
sparql.setQuery("""
    prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 
""")
sparql.setReturnFormat(JSON)
results = sparql.query().convert()

for result in results["results"]["bindings"]:
    print(result)
    #print(result["label"]["value"])
Howto use SPARQL with Python ?
library(SPARQL) # SPARQL querying package
library(ggplot2)

# Step 1 - Set up preliminaries and define query
# Define the data.gov endpoint
    endpoint <- "https://opendata1.opendata.u-psud.fr/sparql/"
# create query statement
    query <- "prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 
"
# Step 2 - Use SPARQL package to submit query and save results to a data frame
qd <- SPARQL(endpoint,query)
df <- qd$results
SPARQL with R in less than 5 minutes
#!/usr/bin/env ruby
#
# Install sparql for Ruby
#   gem update --system
#   gem install sparql
#
require 'sparql/client'

endpoint = "https://opendata1.opendata.u-psud.fr/sparql/"
sparql = <<-EOT
prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 

EOT

#For Wikidata, the method get is required
#For other SPARQL endpoints, the method post is prefered
client = SPARQL::Client.new(endpoint, :method => :get)
rows = client.query(sparql)

puts "Number of rows: #{rows.size}"
for row in rows
  for key,val in row do
    # print "#{key.to_s.ljust(10)}: #{val}\t"
    print "#{key}: #{val}\t"
  end
  print "\n"
end
Doc Ruby for SPARQL 1.1
endpoint = 'https://opendata1.opendata.u-psud.fr/sparql/';

query = ['prefix daapp: <http://daap.eu/wiki/Data:Project#>  '...
'prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#>  '...
'prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> '...
'select distinct ?spc '...
'where { '...
' '...
' '...
'  		{ '...
'          select ?spc '...
'                 where { '...
'       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign . '...
'         ?campaign project:hasSlide ?slide . '...
'    	?slide project:hasCell ?cell . '...
'             ?cell project:hasPosition ?position. '...
'             ?position 	project:hasMeasure ?spc . '...
'          } '...
'   }UNION{ '...
'           select ?spc '...
'                 where { '...
'       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign . '...
'         ?campaign project:hasSlide ?slide . '...
'             ?position 	project:hasMeasure ?spc . '...
'          } '...
'    } '...
'           '...
'}  '...
' '];

url_head = strcat(endpoint,'?query=');
url_query = urlencode(query);
format = 'text/tab-separated-values';
url_tail = strcat('&format=', format);

url = strcat(url_head, url_query, url_tail);

% get the data from the endpoint
query_results = urlread(url);

% write the data to a file so that tdfread can parse it
fid = fopen('query_results.txt','w');
if fid>=0
    fprintf(fid, '%s\n', query_results)
    fclose(fid)
end

% this reads the tsv file into a struct
sparql_data = tdfread('query_results.txt')
Project Github MatlabSPARQL
<?php
require __DIR__ . '/../vendor/autoload.php';
use BorderCloud\SPARQL\SparqlClient;

$endpoint ="https://opendata1.opendata.u-psud.fr/sparql/";
$sp_readonly = new SparqlClient();
$sp_readonly->setEndpointRead($endpoint);
$q = <<<EOD
prefix daapp: <http://daap.eu/wiki/Data:Project#> 
prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#> 
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
select distinct ?spc
where {


  		{
          select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
    	?slide project:hasCell ?cell .
             ?cell project:hasPosition ?position.
             ?position 	project:hasMeasure ?spc .
          }
   }UNION{
           select ?spc
                 where {
       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign .
         ?campaign project:hasSlide ?slide .
             ?position 	project:hasMeasure ?spc .
          }
    }
          
} 
EOD;
$rows = $sp_readonly->query($q, 'rows');
$err = $sp_readonly->getErrors();
if ($err) {
      print_r($err);
      throw new Exception(print_r($err,true));
}

foreach($rows["result"]["variables"] as $variable){
        printf("%-20.20s",$variable);
        echo '|';
 }
 echo "\n";

foreach ($rows["result"]["rows"] as $row){
        foreach($rows["result"]["variables"] as $variable){
                printf("%-20.20s",$row[$variable]);
        echo '|';
        }
        echo "\n";
 }
 ?>
Project Github BorderCloud/SPARQL
import com.bordercloud.sparql.Endpoint;
import java.util.ArrayList;
import java.util.HashMap;

public class Main {

    public static void main(String[] args) {
        try {
            Endpoint sp = new Endpoint("https://opendata1.opendata.u-psud.fr/sparql/";, false);

            String querySelect = 'prefix daapp: <http://daap.eu/wiki/Data:Project#>  \n'
                    + 'prefix project:<http://daap.eu/wiki/Data:Analyse_des_macrophages#>  \n'
                    + 'prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n'
                    + 'select distinct ?spc \n'
                    + 'where { \n'
                    + ' \n'
                    + ' \n'
                    + '  		{ \n'
                    + '          select ?spc \n'
                    + '                 where { \n'
                    + '       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign . \n'
                    + '         ?campaign project:hasSlide ?slide . \n'
                    + '    	?slide project:hasCell ?cell . \n'
                    + '             ?cell project:hasPosition ?position. \n'
                    + '             ?position 	project:hasMeasure ?spc . \n'
                    + '          } \n'
                    + '   }UNION{ \n'
                    + '           select ?spc \n'
                    + '                 where { \n'
                    + '       <http://daap.eu/wiki/Analyse_des_macrophages_méthode_1>  daapp:hasCampaign ?campaign . \n'
                    + '         ?campaign project:hasSlide ?slide . \n'
                    + '             ?position 	project:hasMeasure ?spc . \n'
                    + '          } \n'
                    + '    } \n'
                    + '           \n'
                    + '}  \n'
                    + ' \n';

            HashMap rs = sp.query(querySelect);
            printResult(rs,30);

        }catch(EndpointException eex) {
            System.out.println(eex);
            eex.printStackTrace();
        }
    }

    public static void printResult(HashMap rs , int size) {

      for (String variable : (ArrayList) rs.get("result").get("variables")) {
        System.out.print(String.format("%-"+size+"."+size+"s", variable ) + " | ");
      }
      System.out.print("\n");
      for (HashMap value : (ArrayList>) rs.get("result").get("rows")) {
        //System.out.print(value);
        /* for (String key : value.keySet()) {
         System.out.println(value.get(key));
         }*/
        for (String variable : (ArrayList) rs.get("result").get("variables")) {
          //System.out.println(value.get(variable));
          System.out.print(String.format("%-"+size+"."+size+"s", value.get(variable)) + " | ");
        }
        System.out.print("\n");
      }
    }
}
Project Github BorderCloud/SPARQL-JAVA
Very soon !
TODO